Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs12365859 chr11:34295560 A/G 0.000118 111 13.2 16.3 0 KM Plot
LAML rs12413228 chr10:849230 G/T 9.81E-6 111 16.3 15.67 7.62 KM Plot
LAML rs12413763 chr10:849454 A/G 1.87E-6 110 16.3 15.7 7.13 KM Plot
LAML rs12432582 chr14:77911138 G/T 0.000154 111 13.1 21.78 1.02 KM Plot
LAML rs12433521 chr14:77933451 T/C 0.000164 111 13.1 21.78 1.02 KM Plot
LAML rs12435676 chr14:77902933 G/A 0.000164 111 13.15 20.27 1.02 KM Plot
LAML rs12459122 chr19:16217834 T/C 3.05E-5 106 16.2 9.13 0 KM Plot
LAML rs12459829 chr19:16219567 A/G 0.000133 107 16.2 8.13 0 KM Plot
LAML rs12459889 chr19:16219882 A/G 0.000133 107 16.2 8.13 0 KM Plot
LAML rs12461558 chr19:16241454 C/T 9.83E-5 108 16.2 7.13 0 KM Plot
LAML rs12462700 chr19:16248944 C/T 0.000124 107 16.27 10.15 0 KM Plot
LAML rs12462702 chr19:16248973 C/T 0.000124 107 16.27 10.15 0 KM Plot
LAML rs12568038 chr1:100879914 C/T 0.000164 108 16.3 15.23 6.03 KM Plot
LAML rs12612240 chr2:238392538 G/A 0.000115 111 12.65 21.32 0 KM Plot
LAML rs12617381 chr2:240546421 A/G 0.000139 107 13.2 27.4 0 KM Plot